@User I'm extracting a netlist from a .gds view (same design w/ PNPs). I noticed that the extracted netlist has

.subckt sky130_fd_pr__rf_pnp_05v5_W3p40L3p40 Collector Base Emitter
X0 Collector Base Emitter sky130_fd_pr__pnp_05v5 area=0p
.ends

instead of the schematic's

.subckt sky130_fd_pr__rf_pnp_05v5_W3p40L3p40 Emitter Collector Base m=1
X0 Collector Base Emitter sky130_fd_pr__pnp_05v5_W3p40L3p40
.ends

Do you see the same behavior? I'll PM you the .gds in question.