Magic does not check this rule correctly, and we have updated the klayout rule deck to. . . maybe. . . check this rule correctly.
I may be able to implement the rule correctly in magic now that I understand it. The MiM cap rules in the open source documentation are not the right rules for the sky130 process (they belong to a MiM cap used on some other variant of the original S8 process). The bottom plate spacing rule requires checking the distance from an imaginary rectangle made from expanding the CAPM layer by some amount, then ensuring at least 1.2um spacing from that imaginary rectangle to the nearest facing edge of metal3 not belonging to the same net.