That seems hard to do. FIB jobs are expensive, so you have to weight that cost against just feeding these projects into a future shuttle run. . . time vs. money (and a lot of either one). If you can tap a probe into the three serial lines (clock, data, load/reset) then yes, you could force the serial load to complete. Those lines probably don't go above metal3, so you'd need some pretty deep cuts to reach them.